Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs10167888 chr2:24337707 T/C 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs10169302 chr2:107232264 A/G 0.000239 176 26.57 23.53 25.87 KM Plot
PCPG rs10170821 chr2:24260145 G/C 0.000118 177 25.28 26.57 17.43 KM Plot
PCPG rs10172426 chr2:24336297 G/A 0.000114 177 25.28 27.27 17.43 KM Plot
PCPG rs1017584 chr2:61567906 T/C 0.000461 178 23.77 30.18 17.85 KM Plot
PCPG rs10177683 chr2:24295194 C/G 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs10179389 chr2:118536407 C/T 1.67E-5 177 24.85 30.33 11.65 KM Plot
PCPG rs10181183 chr2:24326506 C/T 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs10181367 chr2:24326684 C/T 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs10185920 chr2:24353063 C/G 0.00011 178 25.28 26.92 17.43 KM Plot
PCPG rs10187612 chr2:24358344 C/T 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs10188130 chr2:24358786 C/T 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs10188977 chr2:24324172 T/G 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs10189013 chr2:24293467 C/T 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs10189443 chr2:24293891 C/T 0.00011 178 25.4 26.57 17.43 KM Plot